| Publication | Title | PubMed | Accession number | metadata | counts | Updated_time |
|---|---|---|---|---|---|---|
| Yan et al., 2013 | Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells | 23934149 | GSE36552 | Yan_2013_PMID_23934149.meta.tsv | Yan_2013_PMID_23934149.counts.gz | July_2024 |
| Petropoulos et al., 2016 | Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos | 27062923 | E-MTAB-3929 | Petropoulos_2016_PMID_27062923.meta.tsv | Petropoulos_2016_PMID_27062923.counts.gz | July_2024 |
| Xiang et al., 2020 | A developmental landscape of 3D-cultured human pre-gastrulation embryos | 31830756 | GSE136447 | Xiang_2020_PMID_31830756.meta.tsv | Xiang_2020_PMID_31830756.counts.gz | July_2024 |
| Tyser et al., 2021 | Single-cell transcriptomic characterization of a gastrulating human embryo. | 34789876 | E-MTAB-9388 | Tyser_2021_PMID_34789876.meta.tsv | Tyser_2021_PMID_34789876.counts.gz | July_2024 |
| Meistermann et al., 2021 | Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification | 34004179 | PRJEB30442 | Meistermann_2021_PMID_34004179.meta.tsv | Meistermann_2021_PMID_34004179.counts.gz | July_2024 |
| Zhou et al., 2019 | Reconstituting the transcriptome and DNA methylome landscapes of human implantation | 31435013 | GSE109555 | Zhou_2019_PMID_31435013.meta.tsv | Zhou_2019_PMID_31435013.counts.gz | July_2024 |
| Blakely et al., 2015 | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq | 26293300 | GSE66507 | Blakely_2015_PMID_26293300.meta.tsv | Blakely_2015_PMID_26293300.counts.gz | July_2024 |
| Xue et al., 2013 | Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing | 23892778 | GSE44183 | Xue_2013_PMID_23892778.meta.tsv | Xue_2013_PMID_23892778.counts.gz | July_2024 |
| Mole et al., 2021 | A single cell characterisation of human embryogenesis identifies pluripotency transitions and putative anterior hypoblast centre | 34140473 | E-MTAB-8060 | Mole_2021_PMID_34140473.meta.tsv | Mole_2021_PMID_34140473.counts.gz | July_2024 |
| Yu et al., 2021 | Blastocyst-like structures generated from human pluripotent stem cells | 33731924 | GSE150578 | Yu_2021_PMID_33731924.meta.tsv | Yu_2021_PMID_33731924.counts.gz | July_2024 |
| Liu et al., 2021 | Modelling human blastocysts by reprogramming fibroblasts into iBlastoids | 33731926 | GSE156596 | Liu_2021_PMID_33731926.meta.tsv | Liu_2021_PMID_33731926.counts.gz | July_2024 |
| Kagawa et al., 2022 | Human blastoids model blastocyst development and implantation | 34856602 | GSE177689 | Kagawa_2022_PMID_34856602.meta.tsv | Kagawa_2022_PMID_34856602.counts.gz | July_2024 |
| Fan et al., 2021 | Generation of human blastocyst-like structures from pluripotent stem cells | 34489415 | GSE158971 | Fan_2021_PMID_34489415.meta.tsv | Fan_2021_PMID_34489415.counts.gz | July_2024 |
| Sozen et al., 2021 | Reconstructing aspects of human embryogenesis with pluripotent stem cells | 34548496 | GSE178326 | Sozen_2021_PMID_34548496.meta.tsv | Sozen_2021_PMID_34548496.counts.gz | July_2024 |
| Yu et al., 2023 | Large-scale production of human blastoids amenable to modeling blastocyst development and maternal-fetal cross talk | 37683605 | GSE210962 | Yu_2023_PMID_37683605.meta.tsv | Yu_2023_PMID_37683605.counts.gz | July_2024 |
| Karvas et al., 2023 | 3D-cultured blastoids model human embryogenesis from pre-implantation to early gastrulation stages | 37683602 | GSE226794 | Karvas_2023_PMID_37683602.meta.tsv | Karvas_2023_PMID_37683602.counts.gz | July_2024 |
| Weatherbee et al., 2023 | Pluripotent stem cell-derived model of the post-implantation human embryo | 37369347 | GSE218314 | Weatherbee_2023_PMID_37369347.meta.tsv | Weatherbee_2023_PMID_37369347.counts.gz | July_2024 |
| Pedroza et al., 2023 | Self-patterning of human stem cells into post-implantation lineages | 37369348 | GSE208195 | Pedroza_2023_PMID_37369348.meta.tsv | Pedroza_2023_PMID_37369348.counts.gz | July_2024 |
| Liu et al., 2023 | Modeling post-implantation stages of human development into early organogenesis with stem-cell-derived peri-gastruloids | 37478861 | GSE232861 | Liu_2023_PMID_37478861.meta.tsv | Liu_2023_PMID_37478861.counts.gz | July_2024 |
| Oldak et al., 2023 | Complete human day 14 post-implantation embryo models from naive ES cells | 37673118 | GSE239932 | Oldak_2023_PMID_37673118.meta.tsv | Oldak_2023_PMID_37673118.counts.gz | July_2024 |
| Hislop et al., 2024 | Modeling post-implantation human development to yolk sac blood emergence | 38092041 | GSE247111 | Hislop_2024_PMID_38092041.meta.tsv | Hislop_2024_PMID_38092041.counts.gz | July_2024 |
| Guo et al., 2021 | Human naive epiblast cells possess unrestricted lineage potential | 33831366 | GSE166422 | Guo_2021_PMID_33831366.meta.tsv | Guo_2021_PMID_33831366.counts.gz | July_2024 |
| Osnato et al., 2021 | TGF_ signalling is required to maintain pluripotency of human na•ve pluripotent stem cells | 34463252 | E-MTAB-10018 | Osnato_2021_PMID_34463252.meta.tsv | Osnato_2021_PMID_34463252.counts.gz | July_2024 |
| Io et al., 2021 | Capturing human trophoblast development with naive pluripotent stem cells in vitro | 33831365 | GSE167924 | Io_2021_PMID_33831365.meta.tsv | Io_2021_PMID_33831365.counts.gz | July_2024 |
| Soncin et al., 2022 | Derivation of functional trophoblast stem cells from primed human pluripotent stem cells | 35594858 | GSE182791 | Soncin_2022_PMID_35594858.meta.tsv | Soncin_2022_PMID_35594858.counts.gz | July_2024 |
| Ohgushi et al., 2022 | Delamination of trophoblast-like syncytia from the amniotic ectodermal analogue in human primed embryonic stem cell-based differentiation model | 35732132 | GSE196365 | Ohgushi_2022_PMID_35732132.meta.tsv | Ohgushi_2022_PMID_35732132.counts.gz | July_2024 |
| in-house_BAP_treated | This project | This project | This project (GSE254641) | This_project.meta.tsv | This_project.counts.gz | July_2024 |
| Mazid et al., 2022 | Rolling back human pluripotent stem cells to an eight-cell embryo-like stage | 35314832 | CNP0001454 | Mazid_2022_PMID_35314832.meta.tsv | Mazid_2022_PMID_35314832.counts.gz | July_2024 |
| Yoshihara et al., 2022 | Transient DUX4 expression in human embryonic stem cells induces blastomere-like expression program that is marked by SLC34A2 | 35777358 | E-MTAB-10581 | Yoshihara_2022_PMID_35777358.meta.tsv | Yoshihara_2022_PMID_35777358.counts.gz | July_2024 |
| Zheng et al., 2019 | Controlled modelling of human epiblast and amnion development using stem cells | 31511693 | GSE134571 | Zheng_2019_PMID_31511693.meta.tsv | Zheng_2019_PMID_31511693.counts.gz | July_2024 |
| Pham et al., 2022 | Modeling human extraembryonic mesoderm cells using naive pluripotent stem cells | 36055191 | GSE191286 | Pham_2022_PMID_36055191.meta.tsv | Pham_2022_PMID_36055191.counts.gz | July_2024 |
| Yanagida et al., 2021 | Naive stem cell blastocyst model captures human embryo lineage segregation | 33957081 | GSE171820 | Yanagida_2021_PMID_33957081.meta.tsv | Yanagida_2021_PMID_33957081.counts.gz | July_2024 |
| Ai et al., 2023 | Dissecting peri-implantation development using cultured human embryos and embryo-like assembloids | 37460804 | PRJCA017779 | Ai_2023_PMID_37460804_embryo_part.meta.tsv | Ai_2023_PMID_37460804_embryo_part.counts.gz | July_2024 |
| Ai et al., 2023 | Dissecting peri-implantation development using cultured human embryos and embryo-like assembloids | 37460804 | PRJCA017779 | Ai_2023_PMID_37460804_assembloid_part.meta.tsv | Ai_2023_PMID_37460804_assembloid_part.counts.gz | July_2024 |